Welcome to the FISHnet project website

You can find general information about the project and the project team in the About FISHnet section. The blog below will be used to provide updates on project progress. Participants and partners can gain access to restricted content by signing in on the right-hand side.

The FISHNet Project is now complete

The FISHNet project is now complete and we're busy integrating what we've built into the new FreshwaterLife website www.freshwaterlife.org. We hope to have the data-sharing and publication part of the site up and running and available to the public in the next few months. Thank you to those who have taken the time to give us their input and feedback.

2nd FISHNet workshop held on 23rd Feb at KCL in London.

The second FISHNet workshop was held at King's College London on 23rd February 2011. Most of those who attended were at the previous workshop in March 2010 but with some new people becoming involved in the project for the first time.

The workshop covered progress since the March 2010 workshop and demonstrated how the FISHNet team had implemented as many of the features requestedat the first workshop as possible, as well as how the team had created solutions for various problems discussed in the previous workshop.

A large amount of feedback was given by those taking part and these suggestions and newly discovered bugs will be added to the freshwaterlife issue tracker (www.freshwaterlife.org/issues) for the development team to work on.

FBA Library Catalogue being added to the repository

The FISHNet project is using Fedora Commons as its digital repository. When we began investigating how to migrate exisiting FreshwaterLife XML Knowledge Objects (KOs) into this system we discovered that the schema for these KOs was based on the FBA's existing library catalogue. With this in mind it made sense to try to ingest the ~250,000 library catalgue records to the new repository and then extend this work to include the FreshwaterLife KOs.

We're planning on ingesting the FBA library catalogue to Fedora this week and hope to have it able to display records by next week, this will also be integrated into our new search portlet in the near future. We will make this available for testing and feedback to FISHNet participants shortly afterwards.

A similar process of release and testing/feedback will follow for other items as we ingest them into the repository. With the likely order of items to ingest being FreshwaterLife KOs, datasets and then if we get time images from our existing Image Archive.

A Simple traffic light system for data.

We've come up with a generic overview of a simple traffic light system for datasets held in the system.

The Red Category

User requirements:

• Uploader/author must provide basic metadata about the dataset in question and contact details aswell as a copy of the data itself. For institutions which have their own data repositories only the metadata and contact info is required, but a link to an appropriate area of the institutional repository is needed. The data itself is not required to be presented in a readily reuseable format.

FISHNet provides:

• Ability to have metadata for a given dataset indexed by our search tools in order to facilitate data discovery by FISHNet users.

Other users:

• Can search and browse for data and contact the owner for more information or a copy of the dataset.

Details: It is envisioned that a dataset will initially be uploaded into the red category where it will have basic metadata and the author/uploader's contact information. This will mean that the amount of 'dead' objects in the system will be minimised. Uploaders need not provide a dataset that is reusable by others, but must make themselves available for contact by others who are interested in their data. Other institutional repositories can also share metadata about their data objects here in this category, such as CEH or the Environment Agency. This should facilitate data discovery whether the data is held in the FISHNet repository or elsewhere.

The Orange Category

User requirements:

• Owner/Author must complete more detailed metadata forms (appropriate metadata schema will depend on the nature of the data) as well as make the dataset available in a reuseable format for other users.

FISHNet provides:

• Tools to facilitate making data reuseable (a possible example being spreadsheet templates), guidance on required metadata or appropriate workflow tools to aid the user. Once the data is in a reuseable format with appropriate metadata a DOI is added in order to make the data citeable. FISHNet will also curate the data for the long term.

Other users:

• Can view improved metadata, only users given permission by the uploader/owner can download the dataset itself.

Details: It is expected that most data will stay in this category whilst being actively used by researchers. To be moved from the Red to the Orange Categories the data will have to meet certain reuse and curation standards so that it can be effectively shared with other researchers without the need for help in interpreting the data by the original author, and also maintained for the long-term. This will require extra effort from the author/uploader of the data so there must be some 'reward' for them making such effort. The return on their time is suggested to be a DOI so that the dataset becomes directly citeable by others. Our experience from talking to the FISHNet participants and other researchers is that some researchers will still be reticent in sharing their data even if it were citable as they may want to be involved in its further use, or may wish to continue working on it and publishing research on it either alone or with selected colleagues. For this reason data in the Orange category will only be made available to registered users of the system as selected by the data uploader/author (there may also be a share with the public option for those who wish to do so).

The Green Category

User requirements:

• Owner/Author must make the dataset available freely to the public uinder an appropriate licence (expected to be the Creative commons 0 licence), they may also - subject to technical development of the project - wish to help in mapping the dataset to an RDF Triple Store so it can be stored as linked data and semantically queried.

FISHNet provides:

• Tools to map data to an RDF Triple Store, long-term curation of the data, tools to integrate the data with other datasets and reuse it in different ways.

Other users:

• Can view the dataset freely and download it in its original format. Can (possibly, dependent on technology available) query the data semantically and derive new datasets from it and other datasets stored in the system.

Details:  Datasets in the Green category are made freely available to the public in a reuseable format and unencumbered by licensing and IPR issues, they may also be mapped to a triple store and available as Linked Data. In order to make this Linked Data as useful as possible the underlying datasets must be released to the public with as permissible a license as possible, the CC0 License. This prevents problems of attribution and rights stacking in successive generations of derived datasets (the provenance of the data is important however and so DOIs assigned in the Orange category will be used for provenace). It is envisioned that most researchers will only wish to migrate their data from the Orange to the Green categories once they are effectively finished working on it and are happy for it to be released (currently this is the stage where most data is put on a CD and stored in a drawer somewhere by many researchers).

The table below summarises the traffic light system.

 

Red

Orange

Green

Basic metadata available to the public, who have ability to contact the author/uploader for more info.

Data is in a managed format so as to make it reusable to others

 

Data has an assigned DOI so it is citeable

 

Data can be shared with other users (as determined by the uploader/owner)

 

Data is freely available in full to all users of the system under the CC0 license.

 

 

Data may be mapped for entry into a triple-store

 

 

Data may be available in the triple store for querying via SPARQL

 

 

Data can be consumed by tools built in FreshwaterLife, i.e. visualization tools on maps etc

 

 


FISHNet poster presentation at IAMSLIC CONFERENCE

The FISHNet project was presented at the 36th Annual IAMSLIC Conference in Mar del Plata, Argentina from 17-21 October 2010. IAMSLIC is the International Association of Aquatic and Marine Science Libraries.

You can download the project poster which triggered interesting discussions at the Conference by clicking the link in the Documents section on the right of this page.

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